1. hipathia::DAdata
    Wilcoxon and limma comparison object for nodes, pathways and functional annotations
    json| rda| rds
    list
  2. hipathia::brca
    BRCA gene expression dataset as SummarizedExperiment
    rda| rds
    SummarizedExperiment
  3. hipathia::brca_data
    BRCA gene expression dataset
    csv| json| rda| rds
    matrix|3187 x 40
  4. hipathia::brca_design
    BRCA experimental design
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 1
  5. hipathia::comp
    Wilcoxon comparison of pathways object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 5
  6. hipathia::exp_data
    Normalized BRCA gene expression dataset
    rda| rds
    SummarizedExperiment
  7. hipathia::go_vals
    Gene Ontology matrix of the BRCA gene expression dataset
    rda| rds
    SummarizedExperiment
  8. hipathia::hidata
    Results object
    rda| rds
    MultiAssayExperiment
  9. hipathia::path_vals
    Pathways matrix of the BRCA gene expression dataset
    rda| rds
    SummarizedExperiment
  10. hipathia::pathways
    Pathways object including pathways has03320 and hsa04012.
    rda| rds
    list
  11. hipathia::results
    Results object
    rda| rds
    MultiAssayExperiment